Package: bRacatus 2.0.0
bRacatus: A Method to Estimate the Accuracy and Biogeographical Status of Georeferenced Biological Data
Automated assessment of accuracy and geographical status of georeferenced biological data. The methods rely on reference regions, namely checklists and range maps. Includes functions to obtain data from the Global Biodiversity Information Facility <https://www.gbif.org/> and from the Global Inventory of Floras and Traits <https://gift.uni-goettingen.de/home>. Alternatively, the user can input their own data. Furthermore, provides easy visualisation of the data and the results through the plotting functions. Especially suited for large datasets. The reference for the methodology is: Arlé et al. (under review).
Authors:
bRacatus_2.0.0.tar.gz
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bRacatus.pdf |bRacatus.html✨
bRacatus/json (API)
NEWS
| # Install 'bRacatus' in R: |
| install.packages('bRacatus', repos = c('https://eduardoarle.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eduardoarle/bracatus/issues
- H_mirandae_sp - Hemitriccus mirandae spatialPoints exemplary file
- ID_raster - Cell ID raster
- Model_accuracy - Accuracy model
- Model_biogeo - Biogeographical model
- Range_Phalanger_orientalis - Range Phalanger orientalis
- pts - Pts example 1
- pts2 - Pts example 2
- signals - Signals example 1
- signals_2 - Signals example 2
- signals_3 - Signals example 3
Last updated 5 months agofrom:a6c1b78fad. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 01 2024 |
| R-4.5-win | NOTE | Sep 01 2024 |
| R-4.5-linux | NOTE | Sep 01 2024 |
| R-4.4-win | NOTE | Sep 01 2024 |
| R-4.4-mac | NOTE | Sep 01 2024 |
| R-4.3-win | NOTE | Sep 01 2024 |
| R-4.3-mac | NOTE | Sep 01 2024 |
Exports:accuracyavailableCountriesbiogeoStatuscountryChecklistgetOccgiftRegionsgiveOccgiveRegionsglonafRegionsoccSpatialPointsplotAccuracyplotBiogeoStatusplotOccplotRefRegrangeMapssignalCalculation
Dependencies:askpassbitbit64classclassIntclicliprcolorspacecpp11crayoncrulcurldata.tableDBIe1071fansifarvergeojsongeojsoniogeojsonsfgeometriesggplot2gluegtablehmshttpcodehttrisobandjqrjsonifyjsonliteKernSmoothlabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeoaiopensslpillarpkgconfigplotfunctionsplyrprettyunitsprogressprotoliteproxyR6rapidjsonrrasterRColorBrewerRcppreadrrgbifrlangrnaturalearths2scalessfsfheadersspstringistringrsysterratibbletidyselecttriebeardtzdbunitsurltoolsutf8V8vctrsviridisLitevroomwhiskerwithrwkxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| accuracy | accuracy |
| availableCountries | availableCountries |
| biogeoStatus | biogeoStatus |
| countryChecklists | countryChecklist |
| getOcc | getOcc |
| giftRegions | giftRegions |
| Input occurrence data | giveOcc |
| giveRegions | giveRegions |
| glonafRegions | glonafRegions |
| Hemitriccus mirandae spatialPoints exemplary file | H_mirandae_sp |
| Cell ID raster | ID_raster |
| Accuracy model | Model_accuracy |
| Biogeographical model | Model_biogeo |
| occSpatialPoints | occSpatialPoints |
| plotAccuracy | plotAccuracy |
| plotBiogeoStatus | plotBiogeoStatus |
| plotOcc | plotOcc |
| plotRefRef | plotRefReg |
| pts example 1 | pts |
| pts example 2 | pts2 |
| Range Phalanger orientalis | Range_Phalanger_orientalis |
| rangeMaps | rangeMaps |
| signalCalculation | signalCalculation |
| signals example 1 | signals |
| signals example 2 | signals_2 |
| signals example 3 | signals_3 |
